To identify the genetic risk factors underlying anti-N-methyl-D-aspartate receptor encephalitis (NMDARE) through a large multi-ethnic GWAS.
The genetic predisposition to NMDARE remains poorly understood. Previous studies in different ethnic populations have yielded heterogeneous findings involving HLA and non-HLA loci. A large multi-ethnic study was needed to clarify the genetic architecture underlying NMDARE.
We performed a GWAS followed by PCA–based control matching in a cohort of 817 NMDARE patients and 11,620 healthy controls. Samples from France (n=256), Germany (n=224), Mexico (n=63), South Korea (n=63), the Netherlands (n=50), Brazil (n=42), Spain (n=36), the UK (n=30), New Zealand (n=25), the US (n=21), and Australia (n=7) were included. WGS was conducted in 20 Caucasian case-control pairs, ACP2-homozygous. Clinical and longitudinal data were also analyzed.
Among cases, 77% were female, 58% Caucasian, with a mean age of onset of 25.4 ± 14.4 years; 19.5% had ovarian teratoma. Three major association peaks were identified: the NR1H3/ACP2 region (rs11039155, β=0.768, SE=0.079, p=3.5×10⁻²²), DMXL2 (rs2124876, β=−0.391, SE=0.060, p=6.1×10⁻¹¹), and HLA-DRB1 (rs9271146, β=0.319, SE=0.063, p=4.6×10⁻⁷). The ACP2 signal showed a recessive effect (OR=13.4, p=7.8×10⁻²³). ACP2-homozygous patients (n=57) were 84% Caucasian, all females of reproductive age, and 96.5% without ovarian teratomas. WGS in 20 ACP2-homozygous cases and controls did not reveal any effect. Compared with non-ACP2 carriers matched by sex, ethnicity, and age, ACP2-homozygous patients had more seizures (92%vs77%, p=0.002), more speech disturbance (88%vs57%), more abnormal EEGs (92%vs75%, p=0.02), less pleocytosis (28%vs49%, p=0.02), and lower mRS scores at follow-up (0.95 ± 0.91 vs 1.46 ± 1.39, p=0.008), with no differences in mortality, ICU admission, or relapse rates.
This study identifies HLA and non-HLA risk loci for NMDARE. DMXL2 represents a novel association present across ethnicities. The ACP2-homozygous subgroup, predominantly Caucasian females, appears to have a milder disease course. These findings identify potential biomarkers and provide insight into disease pathophysiology.