Genetic and Associated Clinical Features of Anti-NMDAR Encephalitis: A Large Multi-ethnic Genome-wide Study
Bruna de Freitas Dias1, Eric Yu2, Sergio Muniz-Castrillo3, Frank Leypoldt4, Gregor Kuhlenbäumer4, Livia Dutra5, Soon-Tae Lee6, Kon Chu6, Maarten Titulaer7, Anna Bastiaansen7, Enrique Gomez Figueroa8, Jose Flores-Rivera9, Graciela Ordoñez-Lozano10, Hannah Jones11, Russell Dale12, Josep Dalmau13, Thais Armangue14, Alexander Sandweiss15, Ivan Chinn15, Eyal Muscal15, Sarosh Irani16, Sophie Binks17, Adam Al-Diwani18, Carsten Finke19, Harald Pruss20, Michael Wilson21, Greer Waldrop21, Anne-Laurie Pinto22, Geraldine Picard22, Emmanuel Mignot2
1Department of Neurology, Stanford University, Stanford, CA, United States, 2Stanford Center for Sleep Science and Medicine, Stanford University, Palo Alto, CA, United States, 3Neurology Department, Hospital Universitario 12 de Octubre, Madrid, Spain, 4Neuroimmunology, Institute of Clinical Chemistry and Department of Neurology, Christian-Albrechts-University/University Hospital Schleswig-Holstein, Kiel, Germany, 5Instituto de Ensino e Pesquisa, Hospital Israelita Albert Einstein, São Paulo, Brazil, 6Department of Neurology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Republic of Korea, 7Department of Neurology, Erasmus University Medical Center, Rotterdam, the Netherlands, 8Department of Neurology, Hospital Civil de Guadalajara, Guadalajara, Mexico, 9National Institute of Neurology and Neurosurgery, Mexico City, Mexico, 10Neuroimmunology Laboratory, Instituto Nacional de Neurología y Neurocirugía, Mexico City, 11Starship Hospital, Centre for Brain Research, Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand, 12Kids Neuroscience Centre, Children’s Hospital at Westmead clinical school, University of Sydney, Sydney, NSW, Australia, 13IDIBAPS-CaixaResearch Institute, Hospital Clínic de Barcelona, Barcelona, Spain, 14IDIBAPS-CaixaResearch Institute, Hospital Clínic de Barcelona, Barcelona, Spain; Pediatric Neuroimmunology Unit, Department of Neurology, Sant Joan de Déu Children's Hospital, ERN-RITA, University of Barcelona, Barcelona, Spain, 15Department of Pediatrics, Baylor College of Medicine, Houston, TX, United States, 16Department of Neurology, John Radcliffe Hospital, Oxford, United Kingdom; Departments of Neurology and Neurosciences, Mayo Clinic, Jacksonville, FL, United States, 17Department of Neurology, John Radcliffe Hospital, Oxford, United Kingdom; Nuffield Department of Clinical Neurosciences, University of Oxford, 18University Department of Psychiatry, University of Oxford, Oxford, UK; National Institute for Health Research (NIHR) Oxford Health Biomedical Research Centre, Oxford Health NHS Foundation Trust, Oxford, UK, 19Department of Neurology and Experimental Neurology, Charité, Universitatsmedizin Berlin, Berlin, Germany, 20Department of Neurology and Experimental Neurology, Charité-Universitätsmedizin Berlin, Berlin, Germany, 21Department of Neurology, School of Medicine, University of California-San Francisco (UCSF), San Francisco, United States, 22French Reference Centre on Paraneoplastic Neurological Syndromes and Autoimmune Encephalitis, Hospices Civils de Lyon, Hôpital Neurologique, MeLiS-UCBL-CNRS UMR 5284. INSERM U1314, University Claude Bernard Lyon 1, Lyon 69008, France
Objective:

To identify the genetic risk factors underlying anti-N-methyl-D-aspartate receptor encephalitis (NMDARE) through a large multi-ethnic GWAS.

Background:

The genetic predisposition to NMDARE remains poorly understood. Previous studies in different ethnic populations have yielded heterogeneous findings involving HLA and non-HLA loci. A large multi-ethnic study was needed to clarify the genetic architecture underlying NMDARE.

Design/Methods:

We performed a GWAS followed by PCA–based control matching in a cohort of 817 NMDARE patients and 11,620 healthy controls. Samples from France (n=256), Germany (n=224), Mexico (n=63), South Korea (n=63), the Netherlands (n=50), Brazil (n=42), Spain (n=36), the UK (n=30), New Zealand (n=25), the US (n=21), and Australia (n=7) were included. WGS was conducted in 20 Caucasian case-control pairs, ACP2-homozygous. Clinical and longitudinal data were also analyzed.

Results:

Among cases, 77% were female, 58% Caucasian, with a mean age of onset of 25.4 ± 14.4 years; 19.5% had ovarian teratoma. Three major association peaks were identified: the NR1H3/ACP2 region (rs11039155, β=0.768, SE=0.079, p=3.5×10⁻²²), DMXL2 (rs2124876, β=−0.391, SE=0.060, p=6.1×10⁻¹¹), and HLA-DRB1 (rs9271146, β=0.319, SE=0.063, p=4.6×10⁻⁷). The ACP2 signal showed a recessive effect (OR=13.4, p=7.8×10⁻²³). ACP2-homozygous patients (n=57) were 84% Caucasian, all females of reproductive age, and 96.5% without ovarian teratomas. WGS in 20 ACP2-homozygous cases and controls did not reveal any effect. Compared with non-ACP2 carriers matched by sex, ethnicity, and age, ACP2-homozygous patients had more seizures (92%vs77%, p=0.002), more speech disturbance (88%vs57%), more abnormal EEGs (92%vs75%, p=0.02), less pleocytosis (28%vs49%, p=0.02), and lower mRS scores at follow-up (0.95 ± 0.91 vs 1.46 ± 1.39, p=0.008), with no differences in mortality, ICU admission, or relapse rates.

Conclusions:

This study identifies HLA and non-HLA risk loci for NMDARE. DMXL2 represents a novel association present across ethnicities. The ACP2-homozygous subgroup, predominantly Caucasian females, appears to have a milder disease course. These findings identify potential biomarkers and provide insight into disease pathophysiology.

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